![]() Hierarchical Genome Assembly Process (aka non-hybrid PacBio assembly)Īssembly with PacBio data uses the hierarchical genome assembly process (HGAP). A stand-alone version 1 of the software is available through our co-developer, Phase Genomics. This method maps HiC data to the FALCON-Unzip assembly to fix phase switches between haplotigs within primary contigs. It then produces a set of partially-phased primaryĬontigs and fully-phased haplotigs which represent divergent haplotypes. It takes the contigs from FALCON and phases the readsīased on heterozygous SNPs identified in the initial assembly. Each a-contig isĪssociated with a homologous genomic region on an p-contig.įALCON-Unzip is a true diploid assembler. Set of associate contigs (a-contigs) which represent divergent allelic variants. FALCON produces a set of primary contigs (p-contigs) as the primary assembly and a The hierarchical genome assembly process (HGAP) and is optimized for large genome assembly though microbial FALCON is a diploid-aware assembler which follows Single-Molecule Real-Time (SMRT) sequences. FALCON and FALCON-Unzip are de novo genome assemblers for PacBio long reads, also known as
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